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Orthanc

Orthanc 0.9.1 updated

Orthanc is a completely free, open source, simple, lightweight, yet powerful RESTful standalone DICOM (Digital Imaging and Communications in Medicine) server that can be used in healthcare and medical research environments. It’s a command-line...

Jmol

Jmol 14.6.5 updated

Jmol is an open source, cross-platform and free graphical software that has been originally designed to act as molecular viewer for 3D chemical structures. It runs in four standalone modes, as a HTML5 web app, a Java program, a Java applet, and a...

Pathomx

Pathomx 3.0.0a

Pathomx (formerly MetaPath) is an open source graphical software implemented in IPython, Qt and PyQt, designed from the ground up to act as an interactive utility for the visualization and analysis of metabolic data under GNU/Linux and other...

Murka

Murka 1.4.1 updated

Murka is a free, cross-platform and open source command-line software that helps users to easily solve the Phylogeny problem, simply by using Median Networks. It includes heuristic methods, exact algorithms, as well as a Steiner problem...

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PathVisio

PathVisio 3.1.3

PathVisio is an open source and completely free graphical application implemented in the Java programming language and designed from the ground up to be used for displaying, analyzing and editing biological pathways under a GNU/Linux operating system.Can...

MACS2

MACS2 2.0.10.20130731

MACS2 is a model based analysis tool for ChIP-Seq data.With the improvement of sequencing techniques, chromatin immunoprecipitation followed by high throughput sequencing (ChIP-Seq) is getting popular to study genome-wide protein-DNA interactions. To...

misopy

misopy 0.4.9

MISO (Mixture of Isoforms) is a probabilistic framework written in Python that quantitates the expression level of alternatively spliced genes from RNA-Seq data, and identifies differentially regulated isoforms or exons across samples.By modeling the...

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CaPSID

CaPSID 1.4.3

CaPSID is a comprehensive open source platform which integrates a high-performance computational pipeline for pathogen sequence identification and characterization in human genomes and transcriptomes together with a scalable results database and a...

Genepidgin

Genepidgin 1.1.1

Genepidgin is a suite of Python tools that assist in evaluation and assignment gene product names. There are three primary components:genepidgin *cleaner* standardizes gene names per UNIPROT naming guidelinesgenepidgin *compare* compares...